Alpha-1 Antitrypsin
(AAT) Deficiency 
Routine genetic testing for alpha-1 antitrypsin deficiency
Pronto Diagnostics Ltd.
CLI September 2004
A new genetic screening assay for alpha-1 antitrypsin
deficiency
Aline Yakir, Dana Cohen, Alal Eran,
Vardit Adir and Chaya Furman The 36th European Human Genetics
Conference, Germany 2004
Alpha-1 antitrypsin deficiency is not a rare disease
but a disease that is rarely diagnosed de Serres FJ.
Environ Health Perspect. 2003 Dec;111(16):1851-4
Worldwide racial and ethnic distribution of alpha-1
antitrypsin deficiency: summary of an analysis of published genetic
epidemiologic surveys de Serres FJ. Chest. 2002
Nov;122(5):1818-29
Genetic risk factors of chronic obstructive pulmonary disease
dJoos L, Pare PD, Sandford AJ
Swiss Med Wkly. 2002 Jan 26;132(3-4):27-37
APC - Colorectal Cancer
Prevalence of the I1307K APC gene variant in Israeli
Jews of differing ethnic origin and risk for colorectal cancer
Rozen P, Shomrat R, Strul H, Naiman T, Karminsky N,
Legum C, Orr-Urtreger A. Gastroenterology. 1999
Jan;116(1):54-7
The I1307K polymorphism of the APC gene in colorectal
cancer Prior TW, Chadwick RB, Papp AC, Arcot AN, Isa
AM, Pearl DK, Stemmermann G, Percesepe A, Loukola A, Aaltonen LA, De
La Chapelle A. Gastroenterology. 1999 Jan;116(1):58-63
Role of APC and DNA mismatch repair genes in the
development of colorectal cancers Narayan S, Roy D.
Mol Cancer. 2003 Dec 12;2(1):41
Hereditary colorectal cancer Lynch HT,
de la Chapelle A N Engl J Med. 2003 Mar 6;348(10):919-32
ApoE
A comparison of two
methods for routine, accurate determination of apolipoprotein E
genotypes McLeod DA, Arnott B, Gaudreault N, Boudreau S,
Sevigny P. Alzheimer's Reports 1998 1 (4): 211-215
Utility of the apolipoprotein E genotype in the
diagnosis of Alzheimer's disease Mayeux R, Saunders
AM, Shea S, Mirra S, Evans D, Roses AD, Hyman BT, Crain B, Tang MX,
Phelps CH. N Engl J Med. 1998 Feb 19;338(8):506-11
Bloom Syndrome
Bloom syndrome and Fanconi's anemia: rate and ethnic
origin of mutation carriers in Israel Peleg L, Pesso
R, Goldman B, Dotan K, Omer M, Friedman E, Berkenstadt M,
Reznik-Wolf H, Barkai G. Isr Med Assoc J. 2002 Feb;4(2):95-7
PRONTO®
Ethnix™ - a
population based approach for genetic testing Navot
N., Furman Y., Cohen D., Yakir A., Tchelet A., Vered N. Lederkremer
M The 34th European Society of Human Genetics Conference,
Strasburg, France, 2002
The Bloom's syndrome gene product is a 3'-5' DNA
helicase Karow JK, Chakraverty RK, Hickson ID J
Biol Chem. 1997 Dec 5;272(49):30611-4
BRCA1 / BRCA2
Role of BRCA gene dysfunction in breast and ovarian
cancer predisposition Scully R. Breast Cancer
Res. 2000;2(5):324-30. Epub 2000 Jul 13
Breast and ovarian cancer risks due to inherited
mutations in BRCA1 and BRCA2 King MC, Marks JH,
Mandell JB; New York Breast Cancer Study Group Science. 2003 Oct
24;302(5645):643-6
BRCA1 gene in breast cancer Rosen EM,
Fan S, Pestell RG, Goldberg ID. J Cell Physiol. 2003
Jul;196(1):19-41
BRCA2 mutation carriers, reproductive factors and
breast cancer risk Tryggvadottir L, Olafsdottir EJ,
Gudlaugsdottir S, Thorlacius S, Jonasson JG, Tulinius H, Eyfjord JE.
Breast Cancer Res. 2003;5(5):R121-8. Epub 2003 Jun 24
Germ-line BRCA1 mutations in Jewish and non-Jewish
women with early-onset breast cancer FitzGerald MG,
MacDonald DJ, Krainer M, Hoover I, O'Neil E, Unsal H, Silva-Arrieto
S, Finkelstein DM, Beer-Romero P, Englert C, Sgroi DC, Smith BL,
Younger JW, Garber JE, Duda RB, Mayzel KA, Isselbacher KJ, Friend
SH, Haber DA. N Engl J Med. 1996 Jan 18;334(3):143-9
Canavan
A benign polymorphism in the aspartoacylase gene may
cause misinterpretation of Canavan gene testing
Propheta O, Magal N, Shohat M, Eyal N, Navot N,
Horowitz M. Eur J Hum Genet. 1998 Nov-Dec;6(6):635-7.
PRONTO®
Ethnix™ - a
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N., Furman Y., Cohen D., Yakir A., Tchelet A., Vered N. Lederkremer
M The 34th European Society of Human Genetics Conference,
Strasburg, France, 2002
Cystic Fibrosis (CF)

SNP-based screening assays for genetic
diseases Furman Y., Cohen D. CLI May 2003
PRONTO®
Ethnix™ - a
population based approach for genetic testing Navot
N., Furman Y., Cohen D., Yakir A., Tchelet A., Vered N. Lederkremer
M The 34th European Society of Human Genetics Conference,
Strasburg, France, 2002
Cystic fibrosis: a worldwide analysis of CFTR
mutations. correlation with incidence data and application to
screening Joseph L. Bobadilla, Milan Macek Jr.,
Jason P. Fine, and Philip M. Farrell Hum Mutat. 2002
Jun;19(6):575-606
'CFTR-opathies': disease phenotypes associated with
cystic fibrosis transmembrane regulator gene mutations
Noone PG, Knowles MR Respir Res. 2001; 2(6):
328-332.
Familial Dysautonomia
(FD) 
Comparison of two methods for routine accurate
determination of the two mutations in the IKBKAP gene causing
Familial Dysautonomia A. Blumenfeld, M. Idelson, L.
Reznik, I. Bejarano-Achache, A. Yakir, Y. Furman, A. Bessudo, D.
Cohen, N. Navot American Society of Human Genetics 52nd Annual
Meeting, Baltimore, Maryland, USA, October 2002
PRONTO®
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population based approach for genetic testing Navot
N., Furman Y., Cohen D., Yakir A., Tchelet A., Vered N. Lederkremer
M The 34th European Society of Human Genetics Conference,
Strasburg, France, 2002
Familial Mediterranean
Fever (FMF) 
MEFV mutation analysis in patients suffering from
amyloidosis of familial Mediterranean fever Livneh
A, Langevitz P, Shinar Y, Zaks N, Kastner DL, Pras M, Pras E.
Amyloid. 1999 Mar;6(1):1-6
Crohn disease in patients with familial Mediterranean
fever Fidder HH, Chowers Y, Lidar M, Sternberg M,
Langevitz P, Livneh A Medicine (Baltimore). 2002 Nov;81(6):411-6
Familial Mediterranean fever: The Genetics of
Inflammation Kastner DL Hosp Pract (Off Ed). 1998
Apr 15;33(4):131-4, 139-40, 143-6 passim
Familial Mediterranean fever: clinical and genetic
characterization in a mixed pediatric population of Jewish and Arab
patients Brik R, Shinawi M, Kepten I, Berant M,
Gershoni-Baruch R. Pediatrics. 1999
May;103(5):e70
Fanconi
Anemia
Bloom syndrome and Fanconi's anemia: rate and ethnic
origin of mutation carriers in Israel Peleg L, Pesso
R, Goldman B, Dotan K, Omer M, Friedman E, Berkenstadt M,
Reznik-Wolf H, Barkai G. Isr Med Assoc J. 2002
Feb;4(2):95-7
PRONTO®
Ethnix™ - a
population based approach for genetic testing Navot
N., Furman Y., Cohen D., Yakir A., Tchelet A., Vered N. Lederkremer
M The 34th European Society of Human Genetics Conference,
Strasburg, France, 2002
Sequence variation in the Fanconi anemia gene FAA
Levran O, Erlich T, Magdalena N, Gregory JJ, Batish SD,
Verlander PC, Auerbach AD Proc Natl Acad Sci U S A. 1997 Nov
25;94(24):13051-6
Gaucher
Disease
Prevalence of glucocerebrosidase mutations in the
Israeli Ashkenazi Jewish population Horowitz M,
Pasmanik-Chor M, Borochowitz Z, Falik-Zaccai T, Heldmann K, Carmi R,
Parvari R, Beit-Or H, Goldman B, Peleg L, Levy-Lahad E, Renbaum P,
Legum S, Shomrat R, Yeger H, Benbenisti D, Navon R, Dror V, Shohat
M, Magal N, Navot N, Eyal N Hum Mutat. 1998;12(4):240-4
PRONTO®
Ethnix™ - a
population based approach for genetic testing Navot
N., Furman Y., Cohen D., Yakir A., Tchelet A., Vered N. Lederkremer
M The 34th European Society of Human Genetics Conference,
Strasburg, France, 2002
Gaucher disease as a paradigm of current issues
regarding single gene mutations of humans Beutler E.
Proc Natl Acad Sci U S A. 1993 Jun
15;90(12):5384-90
Identification of the second common Jewish Gaucher
disease mutation makes possible population-based screening for the
heterozygous state Beutler E, Gelbart T, Kuhl W,
Sorge J, West C. Proc Natl Acad Sci U S A. 1991 Dec
1;88(23):10544-7
Glycogen Storage
Disease Type 1a (GSD1a) 
PRONTO®
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N., Furman Y., Cohen D., Yakir A., Tchelet A., Vered N. Lederkremer
M The 34th European Society of Human Genetics Conference,
Strasburg, France, 2002
Molecular Genetics of Type 1 Glycogen Storage
Diseases Yang Chou J, Mansfield BC Trends
Endocrinol Metab. 1999 Apr;10(3):104-113
Hereditary Deafness (Connexin 26 / Connexin 30)
A novel genetic screening test for hereditary hearing loss
Ruth Gershoni-Baruch, Maytal Mandelman, Nir Navot, Dana Cohen and Alal Eran
The 54th Annual Meeting of the American Society of Human Genetics, Canada 2004
GJB2 (connexin 26) variants and nonsyndromic
sensorineural hearing loss: a HuGE review Kenneson
A, Van Naarden Braun K, Boyle C Genet Med. 2002
Jul-Aug;4(4):258-74
A deletion mutation in GJB6 cooperating with a GJB2
mutation in trans in non-syndromic deafness: A novel founder
mutation in Ashkenazi Jews Lerer I, Sagi M,
Ben-Neriah Z, Wang T, Levi H, Abeliovich D. Hum Mutat. 2001
Nov;18(5):460
Mutations in the connexin 26 gene (GJB2) among
Ashkenazi Jews with nonsyndromic recessive
deafness Morell RJ, Kim HJ, Hood LJ, Goforth L,
Friderici K, Fisher R, Van Camp G, Berlin CI, Oddoux C, Ostrer H,
Keats B, Friedman TB. N Engl J Med. 1998 Nov
19;339(21):1500-5
The prevalence and expression of inherited connexin 26
mutations associated with nonsyndromic hearing loss in the Israeli
population Sobe T, Vreugde S, Shahin H, Berlin M,
Davis N, Kanaan M, Yaron Y, Orr-Urtreger A, Frydman M, Shohat M,
Avraham KB. Hum Genet. 2000
Jan;106(1):50-7
Prevalence and evolutionary origins of the
del(GJB6-D13S1830) mutation in the DFNB1 locus in hearing-impaired
subjects: a multicenter study Del Castillo I,
Moreno-Pelayo MA, Del Castillo FJ, Brownstein Z, Marlin S, Adina Q,
Cockburn DJ, Pandya A, Siemering KR, Chamberlin GP, Ballana E, Wuyts
W, Maciel-Guerra AT, Alvarez A, Villamar M, Shohat M, Abeliovich D,
Dahl HH, Estivill X, Gasparini P, Hutchin T, Nance WE, Sartorato EL,
Smith RJ, Van Camp G, Avraham KB, Petit C, Moreno F Am J Hum
Genet. 2003 Dec;73(6):1452-8. Epub 2003 Oct 21
A deletion involving the connexin 30 gene in
nonsyndromic hearing impairment del Castillo I,
Villamar M, Moreno-Pelayo MA, del Castillo FJ, Alvarez A, Telleria
D, Menendez I, Moreno F. N Engl J Med. 2002 Jan
24;346(4):243-9
Occurrence of del(GIB6-D13S1830) mutation in italian non-syndromic hearing loss patients carrying a single GJB2 mutated allele
F. Gualandi, A. Ravani, A. Berto, S. Burdo , P. Trevisi, A. Ferlini, A. Martini, E. Calzolari
Acta Otolaryngol Suppl. 2004 May;(552):29-34.
A genotype-phenotype correlation for GJB2 (connexin 26) deafness
K Cryns, E Orzan, A Murgia, P L M Huygen, F Moreno, I del Castillo, G Parker Chamberlin,
H Azaiez, S Prasad, R A Cucci, E Leonardi, R L Snoeckx, P J Govaerts, P H Van de Heyning,
C M Van de Heyning, R J H Smith, G Van Camp
J. Med. Genet., Mar 2004; 41: 147-154
A First report of prenatal diagnosis of genetic congenital deafness in a routine prenatal genetic test
Santoro ML, Mobili L, Mesoraca A, Giorlandino C
JPrenat Diagn. 2003 Dec 30;23(13):1083-5.
Connexin 26 preverbal hearing impairment: mutation prevalence and heterozygosity in a selected population
Orzan E, Murgia A, Polli R, Martella M, Mazza A, Zacchello F, Babighian G.
Int J Audiol. 2002 Mar;41(2):120-4
Molecular basis of childhood deafness resulting from mutations in the GJB2 (connexin 26) gene
Rabionet R, Zelante L, Lopez-Bigas N, D'Agruma L, Melchionda S, Restagno G, Arbones ML, Gasparini P, Estivill X
Hum Genet. 2000 Jan;106(1):40-4
Allele specific oligonucleotide analysis of the common deafness mutation 35delG in the connexin 26 (GJB2) gene
Rabionet R, Estivill X
J Med Genet. 1999 Mar;36(3):260-1
Connexin-26 mutations in sporadic and inherited sensorineural deafness
Estivill X, Fortina P, Surrey S, Rabionet R, Melchionda S, D'Agruma L, Mansfield E, Rappaport E, Govea N, Mila M, Zelante L, Gasparini P
Lancet. 1998 Feb 7;351(9100):394-8
Hereditary
Hemochromatosis
A Novel Primer Extension Assay for Hemochromatosis
Genotyping D. Cohen, Y. Furman, M. Lederkremer, P.
Renbaum, H. Steiner, E. Levy-Lahad, H. Hirshko, N. Navot European
Iron Club Meeting, Porto, Portugal September 2002
A population-based study of the clinical expression of
the hemochromatosis gene Olynyk JK, Cullen DJ,
Aquilia S, Rossi E, Summerville L, Powell LW. N Engl J Med. 1999
Sep 2;341(10):718-24
Prevalence of C282Y and H63D mutations in the
hemochromatosis (HFE) gene in the United
States Steinberg KK, Cogswell ME, Chang JC, Caudill
SP, McQuillan GM, Bowman BA, Grummer-Strawn LM, Sampson EJ, Khoury
MJ, Gallagher ML. JAMA. 2001 May 2;285(17):2216-22
Hemochromatosis and Iron-Overload Screening in a Racially Diverse Population Adams PC, Reboussin DM, Barton JC, McLaren CE, Eckfeldt JH, McLaren GD, Dawkins FW, Acton RT, Harris EL, Gordeuk VR, Leiendecker-Foster C, Speechley M, Snively BM, Holup JL, Thomson E, Sholinsky P
N Engl J Med. 2005 Apr 28;352(17):1769-78
Mucolipidosis IV (ML4) 
Determination of two mutations in the MCOLN1 gene
causing mucolipidosis type IV, using a primer extension ELISA
assay M. Mandelman, E. Gak, Y. Weigl, L. Peleg, A.
Tchelet, Y. Furman, D. Cohen, N. Navot Israeli Society of Human
Genetics Annual Meeting, Tel-Aviv, Israel, January
2003
PRONTO®
Ethnix™ - a
population based approach for genetic testing Navot
N., Furman Y., Cohen D., Yakir A., Tchelet A., Vered N. Lederkremer
M The 34th European Society of Human Genetics Conference,
Strasburg, France, 2002
Mucolipidosis type IV is caused by mutations in a gene
encoding a novel transient receptor potential channel
Sun M, Goldin E, Stahl S, Falardeau JL, Kennedy JC,
Acierno JS Jr, Bove C, Kaneski CR, Nagle J, Bromley MC, Colman M,
Schiffmann R, Slaugenhaupt SA. Hum Mol Genet. 2000 Oct
12;9(17):2471-8
Mucolipidosis IV: novel mutation and diverse
ultrastructural spectrum in the skin Bargal R,
Goebel HH, Latta E, Bach G. Neuropediatrics. 2002
Aug;33(4):199-202
The molecular basis of mucolipidosis type IV
Slaugenhaupt SA. Curr Mol Med. 2002 Aug;2(5):445-50
Niemann-Pick
PRONTO®
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population based approach for genetic testing Navot
N., Furman Y., Cohen D., Yakir A., Tchelet A., Vered N. Lederkremer
M The 34th European Society of Human Genetics Conference,
Strasburg, France, 2002
Niemann-Pick disease: a frequent missense mutation in
the acid sphingomyelinase gene of Ashkenazi Jewish type A and B
patients Levran O, Desnick RJ, Schuchman EH.
Proc Natl Acad Sci U S A. 1991 May 1;88(9):3748-52
Niemann-Pick disease: a frequent missense mutation in
the acid sphingomyelinase gene of Ashkenazi Jewish type A and B
patients Levran O, Desnick RJ, Schuchman EH J
Clin Invest. 1991 Sep;88(3):806-10
Tay-Sachs
PRONTO®
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N., Furman Y., Cohen D., Yakir A., Tchelet A., Vered N. Lederkremer
M The 34th European Society of Human Genetics Conference,
Strasburg, France, 2002
Molecular basis of adult-onset and chronic GM2
gangliosidoses in patients of Ashkenazi Jewish origin: substitution
of serine for glycine at position 269 of the alpha-subunit of
beta-hexosaminidase Paw BH, Kaback MM, Neufeld EF.
Proc Natl Acad Sci U S A. 1989 Apr;86(7):2413-7
The major defect in Ashkenazi Jews with Tay-Sachs
disease is an insertion in the gene for the alpha-chain of
beta-hexosaminidase Myerowitz R, Costigan FC J
Biol Chem. 1988 Dec 15;263(35):18587-9
Splice junction mutation in some Ashkenazi Jews with
Tay-Sachs disease: evidence against a single defect within this
ethnic group Myerowitz R. Proc Natl Acad Sci U
S A. 1988 Jun;85(11):3955-9
STay-Sachs screening in the Jewish Ashkenazi population: DNA testing is the preferred procedure
Bach G, Tomczak J, Risch N, Ekstein J
Am J Med Genet. 2001 Feb 15;99(1):70-5
Thrombosis Risk
Factors
PRONTO®
ThromboRisk™ - a novel primer-extension ELISA based assay for the detection of mutations associated with increased risk for thrombophilia
Carmi N, Cohen D, Zvang E, Naparstek E, Deutsch V.
J Clin Lab Anal. 2004;18(5):259-64
A novel ELISA-based primer extension assay for the
detection of the factor V Leiden mutation Wilde JT,
O'Sullivan JJ, Roper JL, Aerts P, Horowitz M, Navot N. Br J
Haematol. 1999 Aug;106(2):427-30
Inherited thrombophilia and pregnancy: Complications,
diagnosis, and treatment Cohen D. ACL April 2002
Genetic susceptibility to venous thrombosis
Seligsohn U, Lubetsky A. N Engl J Med. 2001 Apr
19;344(16):1222-31
Prothrombin and factor V mutations in women with a
history of thrombosis during pregnancy and the puerperium
Gerhardt A, Scharf RE, Beckmann MW, Struve S, Bender
HG, Pillny M, Sandmann W, Zotz RB. N Engl J Med. 2000 Feb
10;342(6):374-80
Protein C deficiency in a controlled series of
unselected outpatients: an infrequent but clear risk factor for
venous thrombosis (Leiden Thrombophilia Study)
Koster T, Rosendaal FR, Briet E, van der Meer FJ,
Colly LP, Trienekens PH, Poort SR, Reitsma PH, Vandenbroucke JP.
Blood. 1995 May 15;85(10):2756-61
A common genetic variation in the 3'-untranslated
region of the prothrombin gene is associated with elevated plasma
prothrombin levels and an increase in venous thrombosis
Poort SR, Rosendaal FR, Reitsma PH, Bertina RM.
Blood. 1996 Nov 15;88(10):3698-703
Clinical and laboratory management of the prothrombin
G20210A mutation McGlennen RC, Key NS. Arch
Pathol Lab Med. 2002 Nov;126(11):1319-25
5,10-Methylenetetrahydrofolate reductase gene variants
and congenital anomalies: a HuGE review Botto LD,
Yang Q. Am J Epidemiol. 2000 May 1;151(9):862-77
Plasma homocysteine as a risk factor for dementia and
Alzheimer's disease Seshadri S, Beiser A, Selhub J,
Jacques PF, Rosenberg IH, D'Agostino RB, Wilson PW, Wolf PA. N
Engl J Med. 2002 Feb 14;346(7):476-83
Usher
Syndrome
A mutation of PCDH15 among Ashkenazi Jews with the
type 1 Usher syndrome Ben-Yosef T, Ness SL, Madeo
AC, Bar-Lev A, Wolfman JH, Ahmed ZM, Desnick RJ, Willner JP, Avraham
KB, Ostrer H, Oddoux C, Griffith AJ, Friedman TB. N Engl J Med.
2003 Apr 24;348(17):1664-70
Mutations in the novel protocadherin PCDH15 cause
Usher syndrome type 1F Alagramam KN, Yuan H, Kuehn
MH, Murcia CL, Wayne S, Srisailpathy CR, Lowry RB, Knaus R, Van Laer
L, Bernier FP, Schwartz S, Lee C, Morton CC, Mullins RF, Ramesh A,
Van Camp G, Hageman GS, Woychik RP, Smith RJ, Hagemen GS. Hum
Mol Genet. 2001 Aug 1;10(16):1709-18
Mutations of the protocadherin gene PCDH15 cause Usher
syndrome type 1F Ahmed ZM, Riazuddin S, Bernstein
SL, Ahmed Z, Khan S, Griffith AJ, Morell RJ, Friedman TB, Riazuddin
S, Wilcox ER. Am J Hum Genet. 2001 Jul;69(1):25-34. Epub 2001
Jun 07
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